Non-animal Methods and Strategies for Developmental Toxicity
Predictive Model of Embryonic Vascular Development
Work to identify alternative methods for developmental toxicity testing has focused on understanding and predicting disruption of key mechanisms in embryonic and fetal development. Adverse outcome pathways provide a useful framework for integrating the evidence derived from in silico and in vitro systems to inform chemical hazard characterization.
An ongoing collaboration between NICEATM and EPA has built and applied an adverse outcome pathway for developmental toxicity through a mode of action linked to embryonic vascular disruption. This adverse outcome pathway was then applied to ToxCast high-throughput screening data to develop predictions of chemicals’ potential to disrupt angiogenesis (Saili et al. 2019). The predictions were evaluated for 38 compounds tested across a suite of functional assays for the angiogenic cycle, including assays in complex cell systems, virtual tissues, and small model organisms. Results increased confidence in the capacity of high-throughput screening data to predict developmental vascular toxicity.
Request for Data and Information on Technologies Used for Identifying Potential Developmental Toxicants
In May 2018, NICEATM requested available data and information on approaches and/or technologies currently used to identify potential developmental toxicants. Submitted information would help:
- Assess the state of the science for these approaches and technologies.
- Determine technical needs for approaches to assess this endpoint.
While the Federal Register notice asked that data be submitted by June 2018, NICEATM continues to accept submissions of relevant data. Respondents to this request should provide information on activities relevant to development or validation of alternatives to in vivo developmental toxicity test methods. NICEATM also requests available data from in vivo developmental studies, human or animal studies, or accidental human exposures, using the same chemicals that are used to evaluate the alternative developmental toxicity test methods.
Respondents to this request for information should include their name, affiliation (if applicable), mailing address, telephone, email, and sponsoring organization (if any) with their communications. Responses to this notice will be posted on this webpage, so no proprietary, classified, confidential, or sensitive information should be included in responses. Persons submitting responses will be identified by name and affiliation or sponsoring organization, if applicable.
The May 2018 request followed a similar request for available data and information issued in June 2016.
- Federal Register notice announcing data request – May 7, 2018
- Federal Register notice announcing data request – June 30, 2016
- Guidelines for Submission of Developmental and Reproductive Toxicity Data
Responses Received to the May 2018 Data Request
- Arantza Muriana, Biobide USA – Assays for teratogenicity and other endpoints using zebrafish embryos
- Relevant references:
- Alzualde A, et al. 2018. Toxicity profiling using a battery of assays in zebrafish embryos including teratogenicity, behavior, cardiotoxicity, ototoxicity, and hepatotoxicity. [Poster]
- Cendoya X, et al. 2018. Novel computational tools based on bioinformatic and chemoinformatic data to complement zebrafish embryo teratogenicity test. [Poster]
- Quevedo C, et al. 2018. Special attention to the neurotoxic potential of 91 compounds from NTP, assessment using zebrafish. [Poster]
- Relevant references:
- Jessica Palmer, Stemina, Inc. – devTOX quickPredict assay
- Updated spreadsheet comparing devTOX quickPredict assay with other developmental toxicity test methods
- Relevant references:
- Palmer JA, et al. A human induced pluripotent stem cell-based in vitro assay predicts developmental toxicity through a retinoic acid receptor-mediated pathway for a series of related retinoid analogues. Reprod Toxicol. 2017;73:350-361.
- Palmer J, et al. 2018. A human pluripotent stem cell-based assay accurately predicts the developmental toxicity potency for a series of valproate analogues. [Poster]
- Cheryl Hobbs, ILS – Toxicogenomics-based assay to measure chemical effects on the stem cell epigenome
- Adrian Fowkes, Lhasa Limited – Identification of potential developmental toxicants using the expert rule-based in silico system Derek Nexus
- Sebastian Hoffmann, SEH Consulting + Services – Performance of the zebrafish embryo test in predicting the presence and absence of malformations in the studies of prenatal development toxicity in rats and rabbits – a systematic review
- Report (UK National Institute of Health Research) – view as webpage
- Summary slides
- Yusuke Marikawa, Burns School of Medicine, University of Hawaii at Manoa – Developmental toxicity assay using cell aggregates derived from mouse pluripotent stem cells
- Relevant references:
- Li ASW, Marikawa Y. An in vitro gastrulation model recapitulates the morphogenetic impact of pharmacological inhibitors of developmental signaling pathways. Mol Reprod Dev. 2015;82:1015-1036.
- Warkus ELL, Yuen AAYQ, Lau CGY, Marakawa Y. Use of in vitro morphogenesis of mouse embryoid bodies to assess developmental toxicity of therapeutic drugs contraindicated in pregnancy. Toxicol Sci. 2016;149(1):15-30.
- Warkus ELL, Marakawa Y. Exposure-based validation of an in vitro gastrulation model for developmental toxicity assays. Toxicol Sci. 2017;157(1):235-245.
- Relevant references:
Responses Received to the June 2016 Data Request
- Miguel Sogorb, Miguel Hernandez University – Embryonic stem cell-based method for predicting embryotoxicity
- Relevant references:
- Estevan C, Fuster E, Del Río E, Pamies D, Vilanova E, Sogorb MA. Organophosphorus pesticide chlorpyrifos and its metabolites alter the expression of biomarker genes of differentiation in D3 mouse embryonic stem cells in a comparable way to other model neurodevelopmental toxicants. Chem Res Toxicol. 2014;27(9):1487-1495.
- Estevan C, Vilanova E, Sogorb MA. Chlorpyrifos and its metabolites alter gene expression at non-cytotoxic concentrations in D3 mouse embryonic stem cells under in vitro differentiation: considerations for embryotoxic risk assessment. Toxicol Lett. 2013;217(1):14-22.
- Pamies D, Bal-Price A, Fabbri M, Gribaldo L, Scelfo B, Harris G, Collotta A, Vilanova E, Sogorb MA. Silencing of PNPLA6, the neuropathy target esterase (NTE) codifying gene, alters neurodifferentiation of human embryonal carcinoma stem cells (NT2). Neuroscience. 2014;281:54-67.
- Pamies D, Sogorb MA, Fabbri M, Gribaldo L, Collotta A, Scelfo B, Vilanova E, Harris G, Bal-Price A. Genomic and phenotypic alterations of the neuronal-like cells derived from human embryonal carcinoma stem cells (NT2) caused by exposure to organophosphorus compounds paraoxon and mipafox. Int J Mol Sci. 2014;15(1):905-26.
- Pamies D, Vilanova E, Sogorb MA. Functional pathways altered after silencing Pnpla6 (the codifying gene of neuropathy target esterase) in mouse embryonic stem cells under differentiation. In Vitro Cell Dev Biol Anim. 2014;50(3):261-73.
- Romero AC, Del Río E, Vilanova E, Sogorb MA. RNA transcripts for the quantification of differentiation allow marked improvements in the performance of embryonic stem cell test (EST). Toxicol Lett. 2015;238(3):60-69.
- Romero AC, Vilanova E, Sogorb MA. Shortening and improving the embryonic stem cell test through the use of gene biomarkers of differentiation. J Toxicol. 2011;2011:286034.
- Sogorb MA, Fuster E, Del Río E, Estévez J, Vilanova E. Effects of mipafox, paraoxon, chlorpyrifos and its metabolite chlorpyrifos-oxon on the expression of biomarker genes of differentiation in D3 mouse embryonic stem cells. Chem Biol Interact. 2016;259(B):368-373. doi: 10.1016/
j.cbi.2016.07.030. - Sogorb MA, Pamies D, Estevan C, Estévez J, Vilanova E. Roles of NTE protein and encoding gene in development and neurodevelopmental toxicity. Chem Biol Interact. 2016;259(B):352-357. doi: 10.1016/
j.cbi.2016.07.030.
- Relevant references:
- Piper Hunt, U.S. Food and Drug Administration – C. elegans models for developmental toxicity
- Relevant references:
- Boyd WA, Smith MV, Co CA, Pirone JR, Rice JR, Shockley KR, Freedman JH. Developmental effects of the ToxCast Phase I and Phase II chemicals in Caenorhabditis elegans and corresponding responses in zebrafish, rats, and rabbits. Environ Health Perspect. 2016;124(5):586-593.
- Harlow PH, Perry SJ, Widdison S, Daniels S, Bondo E, Lamberth C, Currie RA, Flemming AJ. The nematode Caenorhabditis elegans as a tool to predict chemical activity on mammalian development and identify mechanisms influencing toxicological outcomes. Sci Rep. 2016;6:22965.
- Hunt P. The C. elegans model in toxicity testing [published online ahead of print 22 July 2016]. J Appl Toxicol. 2016;37(1):50-59.
- Olson H, Betton G, Robinson D, Thomas K, Monro A, Kolaja G, Lilly P, Sanders J, Sipes G, Bracken W, Dorato M, Van Deun K, Smith P, Berger B, Heller A. Concordance of the toxicity of pharmaceuticals in humans and in animals. Regul Toxicol Pharmacol. 2000;32(1):56-67.
- Sprando RL, Olejnik N, Cinar HN, Ferguson M. A method to rank order water soluble compounds according to their toxicity using Caenorhabditis elegans, a Complex Object Parameter Analyzer and Sorter, and axenic liquid media. Food Chem Toxicol. 2009;47(4):722-728.
- Relevant references:
- Beth Donley, Stemina, Inc. – devTOX quickPredict assay
- Response to NICEATM Request to Data and Information on Developmental Toxicity Test Methods
- Spreadsheet comparing devTOX quickPredict assay with other developmental toxicity test methods
- Relevant references:
- Egnash LA, et al. 2015. A biomarker-based human stem cell assay applied for ranking a retinoid series based on relative developmental toxicity potential. [Poster]
- Egnash LA, et al. 2014. Toward validation of a human in vitro assay for developmental toxicity assessment. [Poster]
- Egnash LA, et al. 2014. A biomarker-based developmental toxicity screen using human induced pluripotent stem cells for compound prioritization. [Poster]
- Kleinstreuer N, et al. Identifying developmental toxicity pathways for a subset of ToxCast chemicals using human embryonic stem cells and metabolomics. Toxicol Appl Pharmacol. 2011;257:111-121.
- Knudsen TB, et al. 2015. Evaluation of 1066 ToxCast chemicals in a human stem cell assay for developmental toxicity. [Poster]
- Palmer JA, et al. 2013. Development of a targeted biomarker assay to predict developmental toxicity using induced pluripotent stem cells. [Poster]
- Sekowski JW, et al. 2012. Key metabolic pathway changes in human embryonic stem cells exposed to methyl parathion and methyl paraoxon. [Poster]
- West PR, et al. Predicting human developmental toxicity of pharmaceuticals using human embryonic stem cells and metabolomics. Toxicol Appl Pharmacol. 2010;247(1):18-27.
- Additional references
Request for Data and Information on Zebrafish Embryo Screening
In November 2016, NICEATM issued a request for available data and information on zebrafish embryo screening tests and protocol design, including pharmacokinetic measurements. This information was used to:
- Assess the state of the science for these methods.
- Determine technical needs for approaches to assess developmental effects.
While the Federal Register notice asked that data be submitted by December 2016, NICEATM continues to accept submissions of relevant data. Respondents should provide information on any activities relevant to the development or validation of zebrafish embryo screening assays.
NICEATM is particularly interested in how study design may influence measures of toxicity/bioactivity and the kinetics associated with chemical uptake. For comparative purposes, NICEATM also requests any available data from in vivo developmental studies using the same chemicals. NICEATM specifically requests information on efforts to optimize zebrafish embryo screening tests and protocol design, including comparisons of:
- Zebrafish strains.
- Embryos with and without an intact chorion, the permeable membrane enclosing the zebrafish embryo.
- Static and static-renewal exposure protocols (i.e., leaving the exposure solution unchanged during the testing period vs. providing fresh exposure solution periodically during the testing period).
NICEATM is also interested in developing a better understanding of pharmacokinetics in the zebrafish embryo model and requests available data on chemical uptake.
- Federal Register notice announcing data request – November 3, 2016
- NTP Guidelines for Public Comments
Responses Received to the November 2016 Data Request
- Robert Tanguay, Oregon State University
- Jyotshna Kanungo, U.S. Food and Drug Administration
- Relevant references:
- Guo X, Dumas M, Robinson BL, Ali SF, Paule MG, Gu Q, Kanungo J. Acetyl L-carnitine targets adenosine triphosphate synthase in protecting zebrafish embryos from toxicities induced by verapamil and ketamine: an in vivo assessment [published online ahead of print 18 May 2016]. J Appl Toxicol. 2016;37(2):192-200.
- Trickler WJ, Guo X, Cuevas E, Ali SF, Paule MG, Kanungo J. Ketamine attenuates cytochrome p450 aromatase gene expression and estradiol-17-beta levels in zebrafish early life stages. J Appl Toxicol. 2014;35(5):480-488.
- Relevant references:
- Josh Butler, ExxonMobil Biomedical Sciences
- Relevant references:
- Butler JD, Parkerton TF, Letinski DJ, Bragin GE, Lampi MA, Cooper KR. A novel passive dosing system for determining the toxicity of phenanthrene to early life stages of zebrafish. Sci Total Environ. 2013;463-464:952-958.
- Butler JD, Parkerton TF, Redman AD, Letinski DJ, Cooper KR. Assessing aromatic-hydrocarbon toxicity to fish early life stages using passive-dosing methods and target-lipid and chemical-activity models. Env Sci Toxicol. 2016;50(15):8305-8315.
- Relevant references: